diff --git a/plinth/modules/letsencrypt/__init__.py b/plinth/modules/letsencrypt/__init__.py
index c161dc115..83c1a49cf 100644
--- a/plinth/modules/letsencrypt/__init__.py
+++ b/plinth/modules/letsencrypt/__init__.py
@@ -126,11 +126,6 @@ class LetsEncryptApp(app_module.App):
 
         return super().repair(remaining_checks)
 
-    def setup(self, old_version):
-        """Install and configure the app."""
-        super().setup(old_version)
-        privileged.setup(old_version)
-
 
 def certificate_obtain(domain):
     """Obtain a certificate for a domain and notify handlers."""
diff --git a/plinth/modules/letsencrypt/privileged.py b/plinth/modules/letsencrypt/privileged.py
index 873641d9a..e9dff41a0 100644
--- a/plinth/modules/letsencrypt/privileged.py
+++ b/plinth/modules/letsencrypt/privileged.py
@@ -13,8 +13,6 @@ import subprocess
 import sys
 from typing import Any
 
-import configobj
-
 from plinth import action_utils
 from plinth import app as app_module
 from plinth import module_loader
@@ -24,7 +22,6 @@ from plinth.modules import letsencrypt as le
 TEST_MODE = False
 LE_DIRECTORY = '/etc/letsencrypt/'
 ETC_SSL_DIRECTORY = '/etc/ssl/'
-RENEWAL_DIRECTORY = '/etc/letsencrypt/renewal/'
 AUTHENTICATOR = 'webroot'
 WEB_ROOT_PATH = '/var/www/html'
 APACHE_PREFIX = '/etc/apache2/sites-available/'
@@ -97,25 +94,6 @@ def _get_status() -> dict[str, Any]:
     return domain_status
 
 
-@privileged
-def setup(old_version: int):
-    """Upgrade old site configuration to new macro based style.
-
-    Nothing to do for first time setup and for newer versions.
-    """
-    if old_version == 2:
-        _remove_old_hooks()
-        return
-
-    if old_version != 1:
-        return
-
-    domain_status = _get_status()
-    with action_utils.WebserverChange() as webserver_change:
-        for domain in domain_status:
-            _setup_webserver_config(domain, webserver_change)
-
-
 @privileged
 def get_status() -> dict[str, dict]:
     """Return a dictionary of currently configured domains."""
@@ -165,47 +143,6 @@ def obtain(domain: str):
         _setup_webserver_config(domain, webserver_change)
 
 
-def _remove_old_hooks():
-    """Remove old style renewal hooks from individual configuration files.
-
-    This has been replaced with global hooks by adding script files in
-    directory /etc/letsencrypt/renewal-hooks/{pre,post,deploy}/.
-    """
-    for file_path in glob.glob(RENEWAL_DIRECTORY + '*.conf'):
-        try:
-            _remove_old_hooks_from_file(file_path)
-        except Exception as exception:
-            print('Error removing hooks from file:', file_path, exception)
-
-
-def _remove_old_hooks_from_file(file_path: str):
-    """Remove old style hooks from a single configuration file."""
-    config = configobj.ConfigObj(file_path)
-    edited = False
-    for line in config.initial_comment:
-        if 'edited by plinth' in line.lower():
-            edited = True
-
-    if not edited:
-        return
-
-    config.initial_comment = [
-        line for line in config.initial_comment
-        if 'edited by plinth' not in line.lower()
-    ]
-
-    if 'pre_hook' in config['renewalparams']:
-        del config['renewalparams']['pre_hook']
-
-    if 'renew_hook' in config['renewalparams']:
-        del config['renewalparams']['renew_hook']
-
-    if 'post_hook' in config['renewalparams']:
-        del config['renewalparams']['post_hook']
-
-    config.write()
-
-
 @privileged
 def copy_certificate(managing_app: str, source_private_key: str,
                      source_certificate: str, private_key: str,